Publications

2025

• Silent Data Corruption by 10× Test Escapes Threatens Reliable Computing.
  Subhasish Mitra, Subho Banerjee, Martin Dixon, Rama Govindaraju, Peter Hochschild, Eric Liu, Bharath Parthasarathy, and Parthasarathy Ranganathan.
  IEEE Design & Test.
  

  •  DOI
  •  arXiv

2021

• Is Function-as-a-Service a Good Fit for Latency-Critical Services?.
  Haoran Qiu, Saurabh Jha, Subho S. Banerjee, Archit Patke, Chen Wang, Hubertus Franke, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  WoSC 2021 (Colocated with Middleware 2021).
  

• Improved GPU Implementations of the Pair-HMM Forward Algorithm for DNA Sequence Alignment.
  Enliang Li, Subho S. Banerjee, Sitao Huang, Ravishankar K. Iyer, Deming Chen.
  ICCD 2021.
  

• BayesPerf: Minimizing Performance Monitoring Errors Using Bayesian Statistics.
  Subho S. Banerjee, Saurabh Jha, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  ASPLOS 2021.
  

  •  DOI
  •  arXiv
  •  Short Talk
  •  Abstract
  •  Paper
  •  Slides

2020

• Live Forensics for HPC Systems: A Case Study on Distributed Storage Systems.
  Saurabh Jha, Shengkun Cui, Subho S. Banerjee, Tianyin Xu, Jeremy Enos, Mike Showerman, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  Supercomputing 2020.
  

  •  Best Paper & Best Student Paper Finalist
  •  DOI
  •  Code
  •  Paper

• FIRM: An Intelligent Fine-Grained Resource Management Framework for SLO-Oriented Microservices.
  Haoran Qiu, Subho S. Banerjee, Saurabh Jha, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  OSDI 2020.
  

  •  DOI
  •  arXiv
  •  Code
  •  Data
  •  Paper

• Machine Learning for Load Balancing in the Linux Kernel.
  Jingde Chen, Subho S. Banerjee, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  ApSys 2020.
  

  •  DOI
  •  Code (Kernel)
  •  Code (ML)
  •  Paper

• Inductive-bias-driven Reinforcement Learning for Efficient Schedules in Heterogeneous Clusters.
  Subho S. Banerjee, Saurabh Jha, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  ICML 2020.
  

  •  DOI
  •  arXiv
  •  Paper
  •  Slides
  •  CSL News

• ML-driven Malware that Targets AV Safety.
  Saurabh Jha, Shengkun Cui, Subho S. Banerjee, James Cyriac, Timothy Tsai, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  DSN 2020.
  

  •  DOI
  •  arXiv
  •  Paper

2019

• ML-based Fault Injection for Autonomous Vehicles: A Case for Bayesian Fault Injection.
  Saurabh Jha, Subho S. Banerjee, Timothy Tsai, Siva K. S. Hari, Michael B. Sullivan, Zbigniew T. Kalbarczyk, Stephen W. Keckler, and Ravishankar K. Iyer.
  DSN 2019.
  

  •  DOI
  •  arXiv
  •  Paper
  •  CSL News
  •  Science Daily
  •  Daily Illini
  •  EurekAlert
  •  Sina
  •  Guancha.cn

• Towards a Bayesian Approach for Assessing Fault Tolerance of Deep Neural Networks.
  Subho S. Banerjee, James Cyriac, Saurabh Jha, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  DSN 2019.
  

  •  DOI
  •  Paper
  •  Slides

• AcMC²: Accelerated Markov Chain Monte Carlo for Probabilistic Models.
  Subho S. Banerjee, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  ASPLOS 2019.
  

  •  DOI
  •  Lightning Talk
  •  Paper
  •  Slides

• CAUDIT: Continuous Auditing of SSH-Servers To Mitigate Brute-Force Attacks.
  Phuong M. Cao, Yuming Wu, Subho S. Banerjee, Justin Azoff, Alex Withers, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  NSDI 2019.
  

  •  DOI
  •  Data
  •  Paper
  •  CSL News

2018

• ASAP: Accelerated Short Read Alignment on Programmable Hardware.
  Subho S. Banerjee, Mohamed el-Hadedy, Jong B. Lim, Steve Lumetta, Zbigniew T. Kalbarczyk, Deming Chen, and Ravishankar K. Iyer.
  IEEE Transactions on Computers.
  

  •  DOI
  •  arXiv
  •  Paper

• A ML-based Runtime System for Executing Dataflow Graphs on Heterogeneous Processors.
  Subho S. Banerjee, Steve Lumetta, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  SoCC 2018.
  

  •  DOI
  •  Paper

• Hands Off the Wheel in Autonomous Vehicles? A Systems Perspective on over a Million Miles of Field Data.
  Subho S. Banerjee, Saurabh Jha, James Cyriac, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  DSN 2018.
  

  •  DOI
  •  Code
  •  Paper
  •  Slides

• AVFI: Fault Injection for Autonomous Vehicles.
  Saurabh Jha, Subho S. Banerjee, James Cyriac, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  DSN 2018.
  

  •  DOI
  •  Code
  •  Paper
  •  Slides

2017

• Symphony: Leveraging Probabilistic Graphical Models to Schedule Tasks to Clusters of Heterogeneous Processors.
  Subho S. Banerjee, Steve Lumetta, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  AISys 2017 (Colocated with SOSP 2017).
  

  •  Paper
  •  Poster
  •  Slides

• On Accelerating Pair-HMM Computations in Programmable Hardware.
  Subho S. Banerjee, Mohamed el-Hadedy, Ching Y. Tan, Zbigniew T. Kalbarczyk, Steve Lumetta, and Ravishankar K. Iyer.
  FPL 2017.
  

  •  DOI
  •  Paper
  •  Slides

• Data-Driven Longitudinal Modeling and Prediction of Symptom Dynamics in Major Depressive Disorder: Integrating Factor Graphs and Learning Methods.
  Arjun Athreya, Subho S. Banerjee, Drew Neavin, Rima Kaddurah-Daouk, A. John Rush, Mark A. Frye, Liewei Wang, Richard M. Weinshilboum, William V. Bobo, and Ravishankar K. Iyer.
  CIBCB 2017.
  

  •  Best Paper Award
  •  DOI
  •  Paper
  •  Forbes

• Bringing Innovations in Systems and Analytics to the Bedside: Design of the CompGen Machine.
  S. S. Banerjee, A. P. Athreya, Y. Varatharajah, M. Aly, C. Tan, Z. Stephens, Z. Kalbarczyk, S. Lumetta, L. Wang, R. Weinshilboum, and R. K. Iyer.
  ECCB 2017.
  

  •  Web
  •  Paper

• ASAP: Accelerated Short Read Alignment on Programmable Hardware.
  Subho S. Banerjee, Mohamed el-Hadedy, Jong B. Lim, Daniel Chen, Zbigniew T. Kalbarczyk, Deming Chen, and Ravishankar K. Iyer.
  FPGA 2017.
  

  •  DOI
  •  Poster

2016

• Efficient and Scalable Workflows for Genomic Analyses.
  Subho S. Banerjee, Arjun P. Athreya, Liudmila S. Mainzer, C. Victor Jongeneel, and Wen-Mei Hwu, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  DIDC 2016 (Colocated with HPDC 2016).
  

  •  DOI
  •  Paper
  •  Slides

2015

• IGen: The Illinois Genomics Execution Environment.
  Subho S. Banerjee and Ravishankar K. Iyer.
  Supercomputing 2015 (SRC).
  

  •  Web
  •  Paper
  •  Poster

2014

• Decomposing Genomics Algorithms: Core Computations for Accelerating Genomics Analyses.
  Arjun P. Athreya, Subho S. Banerjee, C. Victor Jongeneel, Zbigniew T. Kalbarczyk, and Ravishankar K. Iyer.
  Coordinated Science Laboratory Technical Report UILU-ENG-14-2201.
  

  •  Paper

2012

• Two dimensional correlated sampling using alias technique.
  Siddharth Mohanty, Subho S. Banerjee, Johny Jose, Dushyant Goyal, Ajit K. Mohanty, and Federico Carminati.
  ACAT 2012.
  

  •  DOI

2011

• Enhancing the AliEn Web Service Authentication.
  Jianlin Zhu, Pablo Saiz, Federico Carminati, Latchezar Betev, Daicui Zhou, Patricia M. Lorenzo, Alina G. Grigoras, Costin Grigoras, Fabrizio Furano, Steffen Schreiner, Olga V. Datskova, Subho S. Banerjee, and Guoping Zhang.
  ACAT 2011.
  

  •  DOI

• Securing the AliEn File Catalogue - Enforcing authorization with accountable file operations.
  Steffen Schreiner, Stefano Bagnasco, Subho S. Banerjee, Latchezar Betev, Federico Carminati, Olga V. Datskova, Fabrizio Furano, Alina Grigoras, Costin Grigoras, Patricia M. Lorenzo, Andreas J. Peters, Pablo Saiz, and Jianlin Zhu.
  ACAT 2011.
  

  •  DOI
  •  Poster